PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011101170.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family C3H
Protein Properties Length: 437aa    MW: 47417.6 Da    PI: 7.8237
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011101170.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.52.3e-08114134425
                     ---SGGGGTS--TTTTT-SS-S CS
         zf-CCCH   4 elCrffartGtCkyGdrCkFaH 25 
                     +lC+++ + G Ck+Gd+Ck+ H
  XP_011101170.1 114 KLCNHWVQ-GSCKFGDNCKYLH 134
                     69******.************* PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010311.1312753IPR000571Zinc finger, CCCH-type
SMARTSM003560.562752IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.483110137IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.08E-7110135IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-4112136IPR000571Zinc finger, CCCH-type
PfamPF006424.5E-6114134IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.9E-7114133IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:2.130.10.106.9E-14134245IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003204.6E-5141180IPR001680WD40 repeat
SuperFamilySSF509781.56E-46143189IPR017986WD40-repeat-containing domain
PfamPF004001.4E-4144180IPR001680WD40 repeat
PROSITE profilePS5008213.884148189IPR001680WD40 repeat
PROSITE profilePS5029420.566148397IPR017986WD40-repeat-containing domain
PROSITE patternPS006780167181IPR019775WD40 repeat, conserved site
PRINTSPR003203.4E-6167181IPR020472G-protein beta WD-40 repeat
SMARTSM0032033220257IPR001680WD40 repeat
SuperFamilySSF509781.56E-46227430IPR017986WD40-repeat-containing domain
Gene3DG3DSA:2.130.10.107.4E-32246430IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003200.0046264301IPR001680WD40 repeat
PfamPF004000.069269301IPR001680WD40 repeat
PROSITE profilePS5008211.344271310IPR001680WD40 repeat
PRINTSPR003203.4E-6288302IPR020472G-protein beta WD-40 repeat
SMARTSM003202.6E-4304341IPR001680WD40 repeat
PfamPF004000.011306340IPR001680WD40 repeat
PRINTSPR003203.4E-6328342IPR020472G-protein beta WD-40 repeat
SMARTSM003202.5345388IPR001680WD40 repeat
SMARTSM003201.1391428IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 437 aa     Download sequence    Send to blast
MDVDGGRRVF HRIGPSSSTG NGNNNSNKQQ KVCFHWRQGK CTRFPCPFLH SELPAVGNGK  60
RAHQGFGAED NHRGGGGGLR RSGNNYFNKN NTWERVKSQQ PAGSNMSVVK KIEKLCNHWV  120
QGSCKFGDNC KYLHQWSTGD CFTLLAPLEG HQQVVTGIAL PSGSDKLYTG SQDETVRVWD  180
CQSGQLAGLV NLGGAVGCML SEGPWVFVGL TNLVKAWNVE ISADLSLSGP VGQVYSLVVG  240
SDLLFAGTQE GTILAWKFNA ATNSFDPAAS LKGHTLAVVT LVVGGNRMYS GSMDHSIRVW  300
SLETLQCIQT LAAHTDVVMS VLCWDQFLLS ASLDKTVKVW VATETGSLEA TYTHTEEHGL  360
ITLCGMHDSE AKPVLLCSCN DNSIRVYDLP SFSERGRIFG KKEVRSIQIG PGGLFFTGDG  420
SGQVRVWKWS AEPTVTL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ovp_B4e-1690427100391F-box/WD repeat protein 7
2ovq_B4e-1690427100391F-box/WD repeat protein 7
2ovr_B4e-1690427100391F-box/WD repeat protein 7
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011101170.10.0PREDICTED: zinc finger CCCH domain-containing protein 48-like
SwissprotQ9FNZ20.0C3H48_ARATH; Zinc finger CCCH domain-containing protein 48
TrEMBLS8E4C30.0S8E4C3_9LAMI; Uncharacterized protein (Fragment)
STRINGSolyc03g026350.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28842134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25440.10.0zinc finger WD40 repeat protein 1